Proteomics Sandbox¶
Operating System:
Terminal:
Shell:
Editor:
Package Manager:
Programming Language:
Utility:
The Proteomics Sandbox is a platform optimized for software applications used in proteomics. The app is deployed as a virtual desktop environment.
Software tools¶
The following software packages are available:
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Automated peptide and protein identification and quantification using the MSFragger search engine.
Supports the identification of arbitrary PTMs.
Includes additional tools for post-processing and visualization of search results.
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Comprehensive software suite for proteomics data analysis.
Includes protein and peptide identification, quantification, and visualization of spectral matches.
Features an advanced search engine and a user-friendly graphical interface.
PDV:
Visualization tool for spectral matches, particularly those obtained from MSFragger searches.
Allows users to inspect and evaluate the quality of the matches.
Supports annotation and customization of plots.
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User-friendly interface for performing peptide searches using multiple search engines (e.g. MSFragger, X!Tandem, OMSSA).
Supports a wide range of search options and post-processing features.
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Tool for visualizing and analyzing the results of peptide searches performed with SearchGUI.
Includes features for filtering, annotation, and visualization of results.
Supports integration with other proteomics databases and software.
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