SAMtools

type access

type access

SAMtools is a suite of programs for interacting with high-throughput sequencing data.

For more infoermation, check here.

SAMtools utilities

  • addreplacerg

  • ampliconclip

  • ampliconstats

  • bedcov

  • calmd

  • cat

  • collate

  • coverage

  • depad

  • depth

  • dict

  • faidx

  • fasta

  • fastq

  • fixmate

  • flags

  • flagstat

  • fqidx

  • idxstats

  • index

  • markdup

  • merge

  • mpileup

  • phase

  • quickcheck

  • reheader

  • sort

  • split

  • stats

  • targetcut

  • tview

  • view