Cell Ranger ATAC

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Cell Ranger ATAC is a toolset of analysis pipelines from 10X Genomics that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

For more information, check here.

Cell Ranger ATAC Utilities

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Terminal Session

The Cell Ranger ATAC: terminal utility allows the user run the different Cell Ranger ATAC pipelines via command line by clicking

 Open terminal

User Interface

When available, the --uiport=3600 option enables the pipeline's visual user interface (UI), accessible through the button

 Open interface

Note

The UI port must be 3600.