Cell Ranger

7.1.0

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• Terminal:

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• Package Manager:

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• Utility:

7.0.1

6.1.1

5.0.1

3.1.0

Cell Ranger is a toolset of analysis pipelines from 10X Genomics that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

For more information, check here.

Cell Ranger Utilities

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Terminal session

The Cell Ranger: terminal utility allows the user run the different Cell Ranger pipelines via command line by clicking

Open terminal

User interface

When available, the --uiport=3600 option enables the pipeline's visual user interface (UI), accessible through the button

Open interface

Note

The UI port must be 3600.