Cell Ranger¶
Cell Ranger is a toolset of analysis pipelines from 10X Genomics that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.
For more information, check here.
Terminal session¶
The Cell Ranger: terminal utility allows the user run the different Cell Ranger pipelines via command line by clicking
User interface¶
When available, the --uiport=3600
option enables the pipeline's visual user interface (UI), accessible through the button
Note
The UI port must be 3600
.
Contents