Seqtk

Seqtk 1.3-r106 type access

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.

For more information, check here.

Seqtk utilities

  • comp

  • cutN

  • dropse

  • famask

  • fqchk

  • gc

  • hety

  • listhet

  • mergefa

  • mergepe

  • mutfa

  • randbase

  • rename

  • sample

  • seq

  • subseq

  • trimfq